Compile `DeleteCases`











up vote
5
down vote

favorite
1












How is the function DeleteCases compilable if Compile does not support patterns?



My question refers to this thread here where I want to use an If statement without the third argument required. Since my output of the If statement within compile always gives a positive real number, I'd like to get rid of the numbers which I invoke with a negative third argument in the If statement (the third arguments seems to be necessary so that the If statement is compiled at all).



Maybe there now might be even a better solution than this workaround provided by @Mr.Wizard but I do not really understand his suggestion (or is it meant to use DeleteCases outside of Compile?).










share|improve this question


















  • 6




    Only a restricted set of forms is supported in Compile. You can e.g. DeleteCases[list, 123]. I think only literal values can be used as the second argument.
    – Szabolcs
    Nov 21 at 11:03










  • Yes, thank you for pointing it out. I think that is what I encountered here. So it is not usable for my purpose, unfortunately. But I like Henrik's way of avoiding this problem in the first place.
    – Display Name
    Nov 21 at 15:29















up vote
5
down vote

favorite
1












How is the function DeleteCases compilable if Compile does not support patterns?



My question refers to this thread here where I want to use an If statement without the third argument required. Since my output of the If statement within compile always gives a positive real number, I'd like to get rid of the numbers which I invoke with a negative third argument in the If statement (the third arguments seems to be necessary so that the If statement is compiled at all).



Maybe there now might be even a better solution than this workaround provided by @Mr.Wizard but I do not really understand his suggestion (or is it meant to use DeleteCases outside of Compile?).










share|improve this question


















  • 6




    Only a restricted set of forms is supported in Compile. You can e.g. DeleteCases[list, 123]. I think only literal values can be used as the second argument.
    – Szabolcs
    Nov 21 at 11:03










  • Yes, thank you for pointing it out. I think that is what I encountered here. So it is not usable for my purpose, unfortunately. But I like Henrik's way of avoiding this problem in the first place.
    – Display Name
    Nov 21 at 15:29













up vote
5
down vote

favorite
1









up vote
5
down vote

favorite
1






1





How is the function DeleteCases compilable if Compile does not support patterns?



My question refers to this thread here where I want to use an If statement without the third argument required. Since my output of the If statement within compile always gives a positive real number, I'd like to get rid of the numbers which I invoke with a negative third argument in the If statement (the third arguments seems to be necessary so that the If statement is compiled at all).



Maybe there now might be even a better solution than this workaround provided by @Mr.Wizard but I do not really understand his suggestion (or is it meant to use DeleteCases outside of Compile?).










share|improve this question













How is the function DeleteCases compilable if Compile does not support patterns?



My question refers to this thread here where I want to use an If statement without the third argument required. Since my output of the If statement within compile always gives a positive real number, I'd like to get rid of the numbers which I invoke with a negative third argument in the If statement (the third arguments seems to be necessary so that the If statement is compiled at all).



Maybe there now might be even a better solution than this workaround provided by @Mr.Wizard but I do not really understand his suggestion (or is it meant to use DeleteCases outside of Compile?).







compile






share|improve this question













share|improve this question











share|improve this question




share|improve this question










asked Nov 21 at 10:47









Display Name

54038




54038








  • 6




    Only a restricted set of forms is supported in Compile. You can e.g. DeleteCases[list, 123]. I think only literal values can be used as the second argument.
    – Szabolcs
    Nov 21 at 11:03










  • Yes, thank you for pointing it out. I think that is what I encountered here. So it is not usable for my purpose, unfortunately. But I like Henrik's way of avoiding this problem in the first place.
    – Display Name
    Nov 21 at 15:29














  • 6




    Only a restricted set of forms is supported in Compile. You can e.g. DeleteCases[list, 123]. I think only literal values can be used as the second argument.
    – Szabolcs
    Nov 21 at 11:03










  • Yes, thank you for pointing it out. I think that is what I encountered here. So it is not usable for my purpose, unfortunately. But I like Henrik's way of avoiding this problem in the first place.
    – Display Name
    Nov 21 at 15:29








6




6




Only a restricted set of forms is supported in Compile. You can e.g. DeleteCases[list, 123]. I think only literal values can be used as the second argument.
– Szabolcs
Nov 21 at 11:03




Only a restricted set of forms is supported in Compile. You can e.g. DeleteCases[list, 123]. I think only literal values can be used as the second argument.
– Szabolcs
Nov 21 at 11:03












Yes, thank you for pointing it out. I think that is what I encountered here. So it is not usable for my purpose, unfortunately. But I like Henrik's way of avoiding this problem in the first place.
– Display Name
Nov 21 at 15:29




Yes, thank you for pointing it out. I think that is what I encountered here. So it is not usable for my purpose, unfortunately. But I like Henrik's way of avoiding this problem in the first place.
– Display Name
Nov 21 at 15:29










1 Answer
1






active

oldest

votes

















up vote
9
down vote













In code for Compile, it might be a better idea not to delete bad cases but to collect only the good ones with Internal`Bag.



If you have a certain but reasonably sized upper bound for the number od items to collect, you can also employ this less expensive way, using a packed array instead of a expandable data structure such as Internal`Bag:



First, preallocate an array a of sufficient size and a counter c, initialized by 0. Then fill the array in a Do or While loop: Each time your If statement evaluates to True, increase the counter c and write the "good" item into a[[c]]. After having collected all items, truncate the array with a[[1;;c]].



Example



Here are two functions that search the first n positive integers for multiples of 3 or 5:



Internal`Bag-based version (using the Most[{0}] hack to initiaize with an empty bag capable of collecting for integers):



cfBag = Compile[{{n, _Integer}},
Block[{bag},
bag = Internal`Bag[Most[{0}]];

Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
Internal`StuffBag[bag, i];
],
{i, 1, n}];
Internal`BagPart[bag, All]
],
CompilationTarget -> "C"
];


And here is the array-based version:



cfArray = Compile[{{n, _Integer}},
Block[{a, c = 0},
a = Table[0, {n}];
c = 0;
Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
c++;
a[[c]] = i;
],
{i, 1, n}];
If[c > 0, a[[1 ;; c]], {}]
],
CompilationTarget -> "C"
];


Comparison:



r1 = cfBag[10000000]; // RepeatedTiming // First
r2 = cfArray[10000000]; // RepeatedTiming // First
r1 == r2



0.288



0.313



True




To my own surprise, Internal`Bag is faster. Probably because the task is memory bound and because a is much larger than needed in the end (so, too much memory allocation and a potentially superfluous copy operation in the end). The reason seems to be that a call like a[[c]] = i; always checks whether c is within the bounds of a. Deactivating that with RuntimeOptions -> "Speed" makes the two methods equally fast.






share|improve this answer























  • Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
    – Display Name
    Nov 21 at 12:03










  • Thank you very much. I will take a look at it as soon as I can :)
    – Display Name
    Nov 21 at 13:17






  • 1




    For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
    – Display Name
    Nov 21 at 15:23








  • 1




    Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
    – Display Name
    Nov 22 at 13:18








  • 1




    Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
    – Display Name
    Nov 22 at 13:34











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1 Answer
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1 Answer
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active

oldest

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oldest

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oldest

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up vote
9
down vote













In code for Compile, it might be a better idea not to delete bad cases but to collect only the good ones with Internal`Bag.



If you have a certain but reasonably sized upper bound for the number od items to collect, you can also employ this less expensive way, using a packed array instead of a expandable data structure such as Internal`Bag:



First, preallocate an array a of sufficient size and a counter c, initialized by 0. Then fill the array in a Do or While loop: Each time your If statement evaluates to True, increase the counter c and write the "good" item into a[[c]]. After having collected all items, truncate the array with a[[1;;c]].



Example



Here are two functions that search the first n positive integers for multiples of 3 or 5:



Internal`Bag-based version (using the Most[{0}] hack to initiaize with an empty bag capable of collecting for integers):



cfBag = Compile[{{n, _Integer}},
Block[{bag},
bag = Internal`Bag[Most[{0}]];

Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
Internal`StuffBag[bag, i];
],
{i, 1, n}];
Internal`BagPart[bag, All]
],
CompilationTarget -> "C"
];


And here is the array-based version:



cfArray = Compile[{{n, _Integer}},
Block[{a, c = 0},
a = Table[0, {n}];
c = 0;
Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
c++;
a[[c]] = i;
],
{i, 1, n}];
If[c > 0, a[[1 ;; c]], {}]
],
CompilationTarget -> "C"
];


Comparison:



r1 = cfBag[10000000]; // RepeatedTiming // First
r2 = cfArray[10000000]; // RepeatedTiming // First
r1 == r2



0.288



0.313



True




To my own surprise, Internal`Bag is faster. Probably because the task is memory bound and because a is much larger than needed in the end (so, too much memory allocation and a potentially superfluous copy operation in the end). The reason seems to be that a call like a[[c]] = i; always checks whether c is within the bounds of a. Deactivating that with RuntimeOptions -> "Speed" makes the two methods equally fast.






share|improve this answer























  • Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
    – Display Name
    Nov 21 at 12:03










  • Thank you very much. I will take a look at it as soon as I can :)
    – Display Name
    Nov 21 at 13:17






  • 1




    For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
    – Display Name
    Nov 21 at 15:23








  • 1




    Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
    – Display Name
    Nov 22 at 13:18








  • 1




    Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
    – Display Name
    Nov 22 at 13:34















up vote
9
down vote













In code for Compile, it might be a better idea not to delete bad cases but to collect only the good ones with Internal`Bag.



If you have a certain but reasonably sized upper bound for the number od items to collect, you can also employ this less expensive way, using a packed array instead of a expandable data structure such as Internal`Bag:



First, preallocate an array a of sufficient size and a counter c, initialized by 0. Then fill the array in a Do or While loop: Each time your If statement evaluates to True, increase the counter c and write the "good" item into a[[c]]. After having collected all items, truncate the array with a[[1;;c]].



Example



Here are two functions that search the first n positive integers for multiples of 3 or 5:



Internal`Bag-based version (using the Most[{0}] hack to initiaize with an empty bag capable of collecting for integers):



cfBag = Compile[{{n, _Integer}},
Block[{bag},
bag = Internal`Bag[Most[{0}]];

Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
Internal`StuffBag[bag, i];
],
{i, 1, n}];
Internal`BagPart[bag, All]
],
CompilationTarget -> "C"
];


And here is the array-based version:



cfArray = Compile[{{n, _Integer}},
Block[{a, c = 0},
a = Table[0, {n}];
c = 0;
Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
c++;
a[[c]] = i;
],
{i, 1, n}];
If[c > 0, a[[1 ;; c]], {}]
],
CompilationTarget -> "C"
];


Comparison:



r1 = cfBag[10000000]; // RepeatedTiming // First
r2 = cfArray[10000000]; // RepeatedTiming // First
r1 == r2



0.288



0.313



True




To my own surprise, Internal`Bag is faster. Probably because the task is memory bound and because a is much larger than needed in the end (so, too much memory allocation and a potentially superfluous copy operation in the end). The reason seems to be that a call like a[[c]] = i; always checks whether c is within the bounds of a. Deactivating that with RuntimeOptions -> "Speed" makes the two methods equally fast.






share|improve this answer























  • Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
    – Display Name
    Nov 21 at 12:03










  • Thank you very much. I will take a look at it as soon as I can :)
    – Display Name
    Nov 21 at 13:17






  • 1




    For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
    – Display Name
    Nov 21 at 15:23








  • 1




    Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
    – Display Name
    Nov 22 at 13:18








  • 1




    Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
    – Display Name
    Nov 22 at 13:34













up vote
9
down vote










up vote
9
down vote









In code for Compile, it might be a better idea not to delete bad cases but to collect only the good ones with Internal`Bag.



If you have a certain but reasonably sized upper bound for the number od items to collect, you can also employ this less expensive way, using a packed array instead of a expandable data structure such as Internal`Bag:



First, preallocate an array a of sufficient size and a counter c, initialized by 0. Then fill the array in a Do or While loop: Each time your If statement evaluates to True, increase the counter c and write the "good" item into a[[c]]. After having collected all items, truncate the array with a[[1;;c]].



Example



Here are two functions that search the first n positive integers for multiples of 3 or 5:



Internal`Bag-based version (using the Most[{0}] hack to initiaize with an empty bag capable of collecting for integers):



cfBag = Compile[{{n, _Integer}},
Block[{bag},
bag = Internal`Bag[Most[{0}]];

Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
Internal`StuffBag[bag, i];
],
{i, 1, n}];
Internal`BagPart[bag, All]
],
CompilationTarget -> "C"
];


And here is the array-based version:



cfArray = Compile[{{n, _Integer}},
Block[{a, c = 0},
a = Table[0, {n}];
c = 0;
Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
c++;
a[[c]] = i;
],
{i, 1, n}];
If[c > 0, a[[1 ;; c]], {}]
],
CompilationTarget -> "C"
];


Comparison:



r1 = cfBag[10000000]; // RepeatedTiming // First
r2 = cfArray[10000000]; // RepeatedTiming // First
r1 == r2



0.288



0.313



True




To my own surprise, Internal`Bag is faster. Probably because the task is memory bound and because a is much larger than needed in the end (so, too much memory allocation and a potentially superfluous copy operation in the end). The reason seems to be that a call like a[[c]] = i; always checks whether c is within the bounds of a. Deactivating that with RuntimeOptions -> "Speed" makes the two methods equally fast.






share|improve this answer














In code for Compile, it might be a better idea not to delete bad cases but to collect only the good ones with Internal`Bag.



If you have a certain but reasonably sized upper bound for the number od items to collect, you can also employ this less expensive way, using a packed array instead of a expandable data structure such as Internal`Bag:



First, preallocate an array a of sufficient size and a counter c, initialized by 0. Then fill the array in a Do or While loop: Each time your If statement evaluates to True, increase the counter c and write the "good" item into a[[c]]. After having collected all items, truncate the array with a[[1;;c]].



Example



Here are two functions that search the first n positive integers for multiples of 3 or 5:



Internal`Bag-based version (using the Most[{0}] hack to initiaize with an empty bag capable of collecting for integers):



cfBag = Compile[{{n, _Integer}},
Block[{bag},
bag = Internal`Bag[Most[{0}]];

Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
Internal`StuffBag[bag, i];
],
{i, 1, n}];
Internal`BagPart[bag, All]
],
CompilationTarget -> "C"
];


And here is the array-based version:



cfArray = Compile[{{n, _Integer}},
Block[{a, c = 0},
a = Table[0, {n}];
c = 0;
Do[
If[Mod[i, 3] == 0 || Mod[i, 5] == 0,
c++;
a[[c]] = i;
],
{i, 1, n}];
If[c > 0, a[[1 ;; c]], {}]
],
CompilationTarget -> "C"
];


Comparison:



r1 = cfBag[10000000]; // RepeatedTiming // First
r2 = cfArray[10000000]; // RepeatedTiming // First
r1 == r2



0.288



0.313



True




To my own surprise, Internal`Bag is faster. Probably because the task is memory bound and because a is much larger than needed in the end (so, too much memory allocation and a potentially superfluous copy operation in the end). The reason seems to be that a call like a[[c]] = i; always checks whether c is within the bounds of a. Deactivating that with RuntimeOptions -> "Speed" makes the two methods equally fast.







share|improve this answer














share|improve this answer



share|improve this answer








edited Nov 21 at 12:27

























answered Nov 21 at 11:54









Henrik Schumacher

47k466134




47k466134












  • Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
    – Display Name
    Nov 21 at 12:03










  • Thank you very much. I will take a look at it as soon as I can :)
    – Display Name
    Nov 21 at 13:17






  • 1




    For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
    – Display Name
    Nov 21 at 15:23








  • 1




    Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
    – Display Name
    Nov 22 at 13:18








  • 1




    Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
    – Display Name
    Nov 22 at 13:34


















  • Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
    – Display Name
    Nov 21 at 12:03










  • Thank you very much. I will take a look at it as soon as I can :)
    – Display Name
    Nov 21 at 13:17






  • 1




    For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
    – Display Name
    Nov 21 at 15:23








  • 1




    Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
    – Display Name
    Nov 22 at 13:18








  • 1




    Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
    – Display Name
    Nov 22 at 13:34
















Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
– Display Name
Nov 21 at 12:03




Thank you for your answer. Can you maybe provide me with a minimal working example to see how that works out in practice? I only superficially read sth about InternalBag` so far, but it sounded interesting to me.
– Display Name
Nov 21 at 12:03












Thank you very much. I will take a look at it as soon as I can :)
– Display Name
Nov 21 at 13:17




Thank you very much. I will take a look at it as soon as I can :)
– Display Name
Nov 21 at 13:17




1




1




For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
– Display Name
Nov 21 at 15:23






For some reason the example code with Internal`Bag always seems to be slightly faster than the array based solution. Even with the specification of RuntimeOptions->"Speed". At least on my machine. The difference is about 17% of time.
– Display Name
Nov 21 at 15:23






1




1




Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
– Display Name
Nov 22 at 13:18






Yes, sry I thought that minor question isn't worth a new question. I also figured out my mistake with the help of your comment. I sloppily used Compiled`GetElement in the a[[c]] += 1 step, instead of using Part. I guess there is no equivalent to Compiled`GetElement for writing operations. As the name suggests Compiled`GetElement can of course only be used for read operations.
– Display Name
Nov 22 at 13:18






1




1




Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
– Display Name
Nov 22 at 13:34




Just need to be careful when you use the With construct and replace everything with part=Compile`GetElement as you once suggested to me and then not remember the difference between part and Part :D
– Display Name
Nov 22 at 13:34


















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