Krdytkyu

I'm trying to build open3dqsar using intel-mkl and when running ./configure CC=icc --with-intel-mkl && make && make install I get

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... /bin/mkdir -p

checking for gawk... no

checking for mawk... mawk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking build system type... x86_64-pc-linux-gnu

checking host system type... x86_64-pc-linux-gnu

checking for style of include used by make... GNU

checking for gcc... icc

checking whether the C compiler works... no

configure: error: in `/home/ahmed/open3dqsar-2.31':

configure: error: C compiler cannot create executables

See `config.log' for more details

My system is 64-bit ubuntu 16.04, and I don't know anything about compilers to figure out what is happening.

Here is the config.log:

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.



It was created by Open3DQSAR configure 2.3, which was

generated by GNU Autoconf 2.69.  Invocation command line was



  $ ./configure CC=icc --with-intel-mkl



## --------- ##

## Platform. ##

## --------- ##



hostname = ahmed-HP-Pavilion-15-Notebook-PC

uname -m = x86_64

uname -r = 4.15.0-42-generic

uname -s = Linux

uname -v = #45~16.04.1-Ubuntu SMP Mon Nov 19 13:02:27 UTC 2018



/usr/bin/uname -p = unknown

/bin/uname -X     = unknown



/bin/arch              = unknown

/usr/bin/arch -k       = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo      = unknown

/bin/machine           = unknown

/usr/bin/oslevel       = unknown

/bin/universe          = unknown



PATH: /home/ahmed/anaconda3/bin

PATH: ~/pycharm-community-2018.2.4//bin

PATH: /home/ahmed/MGLTools-1.5.6/bin

PATH: /home/ahmed/bin

PATH: /home/ahmed/.local/bin

PATH: /usr/local/sbin

PATH: /usr/local/bin

PATH: /usr/sbin

PATH: /usr/bin

PATH: /sbin

PATH: /bin

PATH: /usr/games

PATH: /usr/local/games

PATH: /snap/bin

PATH: /home/ahmed/Downloads/rDock_2013.1_src/bin

PATH: /home/ahmed/PharmaGist





## ----------- ##

## Core tests. ##

## ----------- ##



configure:2497: checking for a BSD-compatible install

configure:2565: result: /usr/bin/install -c

configure:2576: checking whether build environment is sane

configure:2631: result: yes

configure:2782: checking for a thread-safe mkdir -p

configure:2821: result: /bin/mkdir -p

configure:2828: checking for gawk

configure:2858: result: no

configure:2828: checking for mawk

configure:2844: found /usr/bin/mawk

configure:2855: result: mawk

configure:2866: checking whether make sets $(MAKE)

configure:2888: result: yes

configure:2917: checking whether make supports nested variables

configure:2934: result: yes

configure:3069: checking build system type

configure:3083: result: x86_64-pc-linux-gnu

configure:3103: checking host system type

configure:3116: result: x86_64-pc-linux-gnu

configure:3148: checking for style of include used by make

configure:3176: result: GNU

configure:3247: checking for gcc

configure:3274: result: icc

configure:3503: checking for C compiler version

configure:3512: icc --version >&5

./configure: line 3514: icc: command not found

configure:3523: $? = 127

configure:3512: icc -v >&5

./configure: line 3514: icc: command not found

configure:3523: $? = 127

configure:3512: icc -V >&5

./configure: line 3514: icc: command not found

configure:3523: $? = 127

configure:3512: icc -qversion >&5

./configure: line 3514: icc: command not found

configure:3523: $? = 127

configure:3543: checking whether the C compiler works

configure:3565: icc    conftest.c  >&5

./configure: line 3567: icc: command not found

configure:3569: $? = 127

configure:3607: result: no

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "Open3DQSAR"

| #define PACKAGE_TARNAME "open3dqsar"

| #define PACKAGE_VERSION "2.3"

| #define PACKAGE_STRING "Open3DQSAR 2.3"

| #define PACKAGE_BUGREPORT "<paolo.tosco@unito.it>"

| #define PACKAGE_URL ""

| #define PACKAGE_NAME_LOWERCASE "open3dqsar"

| #define PACKAGE_NAME_UPPERCASE "OPEN3DQSAR"

| #define O3Q 1

| #define PACKAGE "open3dqsar"

| #define VERSION "2.3"

| /* end confdefs.h.  */

| 

| int

| main ()

| {

| 

|   ;

|   return 0;

| }

configure:3612: error: in `/home/ahmed/open3dqsar-2.31':

configure:3614: error: C compiler cannot create executables

See `config.log' for more details



## ---------------- ##

## Cache variables. ##

## ---------------- ##



ac_cv_build=x86_64-pc-linux-gnu

ac_cv_env_CC_set=set

ac_cv_env_CC_value=icc

ac_cv_env_CFLAGS_set=

ac_cv_env_CFLAGS_value=

ac_cv_env_CPPFLAGS_set=

ac_cv_env_CPPFLAGS_value=

ac_cv_env_CPP_set=

ac_cv_env_CPP_value=

ac_cv_env_LDFLAGS_set=

ac_cv_env_LDFLAGS_value=

ac_cv_env_LIBS_set=

ac_cv_env_LIBS_value=

ac_cv_env_LT_SYS_LIBRARY_PATH_set=

ac_cv_env_LT_SYS_LIBRARY_PATH_value=

ac_cv_env_build_alias_set=

ac_cv_env_build_alias_value=

ac_cv_env_host_alias_set=

ac_cv_env_host_alias_value=

ac_cv_env_target_alias_set=

ac_cv_env_target_alias_value=

ac_cv_host=x86_64-pc-linux-gnu

ac_cv_path_install='/usr/bin/install -c'

ac_cv_path_mkdir=/bin/mkdir

ac_cv_prog_AWK=mawk

ac_cv_prog_ac_ct_CC=icc

ac_cv_prog_make_make_set=yes

am_cv_make_support_nested_variables=yes



## ----------------- ##

## Output variables. ##

## ----------------- ##



ACLOCAL='${SHELL} /home/ahmed/open3dqsar-2.31/missing aclocal-1.15'

AMDEPBACKSLASH=''

AMDEP_FALSE='#'

AMDEP_TRUE=''

AMTAR='$${TAR-tar}'

AM_BACKSLASH=''

AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'

AM_DEFAULT_VERBOSITY='1'

AM_V='$(V)'

AR=''

AUTOCONF='${SHELL} /home/ahmed/open3dqsar-2.31/missing autoconf'

AUTOHEADER='${SHELL} /home/ahmed/open3dqsar-2.31/missing autoheader'

AUTOMAKE='${SHELL} /home/ahmed/open3dqsar-2.31/missing automake-1.15'

AWK='mawk'

BUGGY_RINT=''

CC='icc'

CCDEPMODE=''

CFLAGS=''

CPP=''

CPPFLAGS=''

CYGPATH_W='echo'

DEFS=''

DEPDIR='.deps'

DLLTOOL=''

DSYMUTIL=''

DUMPBIN=''

ECHO_C=''

ECHO_N='-n'

ECHO_T=''

EGREP=''

EXEEXT=''

FGREP=''

GREP=''

INSTALL_DATA='${INSTALL} -m 644'

INSTALL_PROGRAM='${INSTALL}'

INSTALL_SCRIPT='${INSTALL}'

INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'

LD=''

LDFLAGS=''

LIBACCELERATE=''

LIBATLAS=''

LIBBLAS=''

LIBEDIT=''

LIBLAPACKE=''

LIBLAPACK_ATLAS=''

LIBLAPACK_F77=''

LIBMKL=''

LIBMKL_LAPACK=''

LIBOBJS=''

LIBS=''

LIBSUNPERF=''

LIBTOOL=''

LIPO=''

LN_S=''

LTLIBOBJS=''

LT_SYS_LIBRARY_PATH=''

MAKEINFO='${SHELL} /home/ahmed/open3dqsar-2.31/missing makeinfo'

MANIFEST_TOOL=''

MKDIR_P='/bin/mkdir -p'

NM=''

NMEDIT=''

OBJDUMP=''

OBJEXT=''

OTOOL64=''

OTOOL=''

PACKAGE='open3dqsar'

PACKAGE_BUGREPORT='<paolo.tosco@unito.it>'

PACKAGE_NAME='Open3DQSAR'

PACKAGE_STRING='Open3DQSAR 2.3'

PACKAGE_TARNAME='open3dqsar'

PACKAGE_URL=''

PACKAGE_VERSION='2.3'

PATH_SEPARATOR=':'

RANLIB=''

SED=''

SET_MAKE=''

SHELL='/bin/bash'

STRIP=''

VERSION='2.3'

WINDOWS_RES=''

ac_ct_AR=''

ac_ct_CC='icc'

ac_ct_DUMPBIN=''

am__EXEEXT_FALSE=''

am__EXEEXT_TRUE=''

am__fastdepCC_FALSE=''

am__fastdepCC_TRUE=''

am__include='include'

am__isrc=''

am__leading_dot='.'

am__nodep='_no'

am__quote=''

am__tar='$${TAR-tar} chof - "$$tardir"'

am__untar='$${TAR-tar} xf -'

bindir='${exec_prefix}/bin'

build='x86_64-pc-linux-gnu'

build_alias=''

build_cpu='x86_64'

build_os='linux-gnu'

build_vendor='pc'

datadir='${datarootdir}'

datarootdir='${prefix}/share'

docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'

dvidir='${docdir}'

exec_prefix='NONE'

host='x86_64-pc-linux-gnu'

host_alias=''

host_cpu='x86_64'

host_os='linux-gnu'

host_vendor='pc'

htmldir='${docdir}'

includedir='${prefix}/include'

infodir='${datarootdir}/info'

install_sh='${SHELL} /home/ahmed/open3dqsar-2.31/install-sh'

libdir='${exec_prefix}/lib'

libexecdir='${exec_prefix}/libexec'

localedir='${datarootdir}/locale'

localstatedir='${prefix}/var'

mandir='${datarootdir}/man'

mkdir_p='$(MKDIR_P)'

oldincludedir='/usr/include'

pdfdir='${docdir}'

prefix='NONE'

program_transform_name='s,x,x,'

psdir='${docdir}'

runstatedir='${localstatedir}/run'

sbindir='${exec_prefix}/sbin'

sharedstatedir='${prefix}/com'

sysconfdir='${prefix}/etc'

target_alias=''



## ----------- ##

## confdefs.h. ##

## ----------- ##



/* confdefs.h */

#define PACKAGE_NAME "Open3DQSAR"

#define PACKAGE_TARNAME "open3dqsar"

#define PACKAGE_VERSION "2.3"

#define PACKAGE_STRING "Open3DQSAR 2.3"

#define PACKAGE_BUGREPORT "<paolo.tosco@unito.it>"

#define PACKAGE_URL ""

#define PACKAGE_NAME_LOWERCASE "open3dqsar"

#define PACKAGE_NAME_UPPERCASE "OPEN3DQSAR"

#define O3Q 1

#define PACKAGE "open3dqsar"

#define VERSION "2.3"



configure: exit 77